Faculties are based on geographical areas or other communities of interest needed to administer the College. They are aimed at supporting GPs in their local areas. Faculties may further be divided into sub-faculties.

The Faculties are based around Auckland, Waikato, Wellington, Canterbury and Otago-Southland and allow members to be involved in discussion and decision-making at a regional level. There are nine sub-faculties which provide local opportunities for connection and collaboration. All College members are automatically assigned to a geographical faculty and will receive information about faculty activities directly.
The College has two national faculties: Te Akoranga a Maui (Maori Faculty) and the Rural Faculty. Membership of these faculties is optional.
A sub-faculty of the Rural Faculty is the Division of Rural Hospital Medicine (DRHM). This covers FDRHMNZs, RHM registrars, GPs working in rural hospitals and rural hospital doctors (MOSS).
Each Faculty appoints two representatives to Council.
| Faculties | Sub-Faculties |
| Te Akoranga a Maui Chairperson: Dr Tane Taylor Secretary: Dr Tangimoana Habib Council Representatives: Dr Jim Vause & Dr Tane Taylor |
|
| Rural Faculty Chairperson: Dr Tim Malloy Secretary: Dr Susie Meyer Treasurer: Dr George Tripe Council Representatives: Dr Greville Wood & Dr Buzz Boothman-Burrell |
Division of Rural Hospital Medicine Sub-Faculty Chairperson: Dr Nina Stupples Deputy President: Dr Alan Murray |
| Auckland Faculty Acting Chairperson: Dr Lois Paton Secretary: Dr Chandrakkanth Jayaraman Council Representatives: Dr Chandrakkanth Jayaraman & Dr Ashwin Patel |
Northland Sub-Faculty Chairperson: Dr Stephen Main Secretary: Dr Kyle Eggleton |
| Waikato Faculty Chairperson: Dr Steven Ringer Secretary: Dr Ralph Wiles Council representatives: Dr Sean Barklie & Dr Cecile de Groot |
Tairawhiti Sub-Faculty Chairperson: Dr David Somerton Secretary: Dr Moira Cunningham |
| Wellington Faculty Chairperson: Dr Dave Pickett Treasurer: Dr Tim Marsland Secretary: John Monro Council Representatives: Dr Richard Tyler |
Hawkes Bay Sub-Faculty Chairperson: Dr Mark Peterson Secretary: Dr Mark Peterson Wairoa Sub-Faculty Chairperson: Dr Colin Chilvers Secretary: Dr Brian Underwood Taranaki Sub-Faculty Chairperson: Dr Johan Peters Secretary: Dr Peter Catt Whanganui Sub-Faculty Chairperson: Dr John Kay Secretary: Dr Alastair Wilson Manawatu Sub-Faculty Chairperson: Dr Martin Minnee Secretary: Dr John Drake Nelson Sub-Faculty Chairperson: Dr Kae Bennetts Secretary: Dr Tony Eames |
| Canterbury Faculty Chairperson: Dr David Pilbrow Council Representatives: Dr David Pilbrow & Professor Les Toop |
|
| Otago-Southland Faculty Chairperson: Dr Craig Pelvin Secretary: Dr Jim Ross Council Representative: Dr Jim Ross & Dr Lilian Van Alphen |
Southland Sub-Faculty Chairperson: Dr Nick Terpstra Secretary: Dr Nick Terpstra |
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